PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68225.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 170aa    MW: 18859 Da    PI: 5.6414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.3e-125321744
                HHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF 17 rngilKKAeELSvLCdaevaviifsstg 44
                r+g++ KA ELS LC+aeva+i +s++g
  OWM68225.1  5 RAGLFSKATELSLLCGAEVAIITYSPHG 32
                89************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MAEDRAGLFS KATELSLLCG AEVAIITYSP HGNRPYVFGY PSVDATIHRF AGVAQATNTT  60
GAFGNPSGDD RLNEYRHQYS DLVLQLEEAR KRQKLGQGPR WWEGPTEDQD VEDLKRYIEC  120
MEKLTEKAGQ RLEELRSTAV AAPISATTCS SDSVVVDLRK KAGFHGDRHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-19M-type_MADS family protein