PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM68439.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 28743.6 Da PI: 9.5752

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM68439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.8e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyey+ OWM68439.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYA 74 79***********************************************8 PP
2	K-box	95.6	8e-32	92	187	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ss+ s++e +a+++qqe++kL+++i nL + +R++lGe+++ + +k++++ e++Le+slkkiR kKnell+++ie++qk+e el++ n+ Lr+k++ OWM68439.1 92 SSTGSVAEINAQYYQQEASKLRAQIGNLLNANRQMLGENVSAMCMKDMRNTENKLETSLKKIRCKKNELLFAEIEYMQKREMELHNSNQFLRAKIA 187 455569999*************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MMFPGQSSED SPGQRKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEIA 60 LIVFSSRGRL YEYANHSVKA TIERYKKACS DSSTGSVAEI NAQYYQQEAS KLRAQIGNLL 120 NANRQMLGEN VSAMCMKDMR NTENKLETSL KKIRCKKNEL LFAEIEYMQK REMELHNSNQ 180 FLRAKIAQNE RSCQQDMNLM PGGGGGANYD IGQPQPSQPP AQPYENRNYF QTNALQPNHS 240 YPRQDQMALQ LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-101	MIKC_MADS family protein