PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68556.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 266aa    MW: 29005.6 Da    PI: 4.2501
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-191758142
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                k+ie+k  r+vtfskRr g++ KA+ELS LC+ae+a+i +s+
  OWM68556.1 17 KKIEDKFAREVTFSKRRGGLFRKASELSMLCGAEIAIIAYSP 58
                68**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MLVARGPPTG KRKRELKKIE DKFAREVTFS KRRGGLFRKA SELSMLCGAE IAIIAYSPPR  60
QPVREQLSEY GRQDREALSR LDAERKRQEA VRDGKAWRWW EEPLGEDLGA EELEDYIKSV  120
ETLMEKVDQR LEVMRGAATA PTPSEGSCGS TVVDPCSDML EMGRATAAPP ATSPTPSEAS  180
WGSTVVDPCS GMLEMGRATA GPPAVEISSG DGGNVVVDPS LLDMIEGEGQ GEEELFVGGE  240
YDFESLSSLL ELDYDIGSMP LWDVGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.11e-14MIKC_MADS family protein