PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68755.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 307aa    MW: 34135.3 Da    PI: 9.788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-092974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWT+ E + + +a + +  +   +W+++a+ ++ g+t  +++ +++ 
       OWM68755.1 29 RWTPAENKMFENALAVHDEDapdRWHRVAALIP-GKTVGDVIKHYRE 74
                     9********************************.***********96 PP
2Myb_DNA-binding45.81.4e-14138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       OWM68755.1 138 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 182
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MKCEMEVLPQ PTRLSSMNWF LDEGKPASRW TPAENKMFEN ALAVHDEDAP DRWHRVAALI  60
PGKTVGDVIK HYRELEVDVS NIEAGLIPVP GYSNTAPFTL EWVNSHGFDG VFKQSFGLGG  120
KRSSSARGPE QERKKGVPWT EEEHKLFLMG LKKYGKGDWR NISRNFVITR TPTQVASHAQ  180
KYFIRQLSGG KDKRRASIHD ITTVNLNETR TPSPDSNRPP CSPDLLSALL PQPPNSSAIS  240
RTPSLWNQNQ PNSGGGAVLP NATHGSNSFA ASQVYGGNNY GLNKMPGQNH HYLGIQNLIF  300
QQHYPRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101MYB_related family protein