PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68797.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 760aa    MW: 85862.3 Da    PI: 6.3237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-1103867571373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+avs++d + a+++L++++ ++sp gd  qRla++f+++L+arl ++++++y+al++++ts    ++ l+a+++++  +P+ k++++ aN
  OWM68797.1 386 LRTLLVLCAQAVSTDDRRTAREYLKQIRRHSSPFGDGSQRLAHCFANGLEARLDGNGTQIYNALSSKRTS---AIDMLKAYQVYVSSCPFQKMANIFAN 481
                 5789*************************************************************99999...9************************* PP

        GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 ++Il+ + ++ +++HiiDf+i +G+QWp+L+  L++ p+gpp+lRiTg++ p++g   +e+++etg+ Lak +e+++vpfe+n+ +a++++++++e+L+
  OWM68797.1 482 HTILDLARKAtSTLHIIDFGILYGFQWPTLIFRLSKLPGGPPKLRITGIELPQPGfrPAERVHETGRHLAKCCERFNVPFEYNA-IAQKWDTVRTEDLK 579
                 ******99997899****************************************9*****************************.7************* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 ++++E ++Vn++++ ++llde+v+l+++rd+vLkl+++++P ++  +  + +++++ F++rf eal +ys+lfd+++++l+re++ r + E+++lgre 
  OWM68797.1 580 LRNDELIVVNSMFRFKNLLDETVALNNPRDSVLKLIRRINPSLFLQAIVNGSYSGPFFVTRFREALFHYSSLFDAFDVNLAREDQMRLMFEKQWLGRES 678
                 *************************************************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 vnv+acega+r+er e++++W+ r ++aGF++vp + +++ ++++ l++ + + + ++e   ++++gWk+r L++ S+W
  OWM68797.1 679 VNVIACEGAARVERPESYKQWQGRNMRAGFRQVPPDPFVMGKMRHRLKERYHEDFVLDEYGCWALQGWKGRILYASSCW 757
                 ***************************************************899************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MTTGSGSLRG FRFDDETLLP CSDQLGNLAD GHSIFSEPSP NSSFTGDHHQ LLVHHQEPGG  60
FSAPSLVLNT QADSLPFDDN DFSETVFNYI SQMLMEEDME EKPSEFHDPS ALEATEKSLF  120
EALAEQCPFS PSNFTCPPYS LDNSFNNNDS GNNTDYGGKP SSPSSFNSIE PQWIGDFGEN  180
NLALLQSPIS KNFILQSTAN SGLQPADLLV STPQVPNLYT QSDLALQIQR GVEEASKFLP  240
KGNQFFTDLE SSSFNLAPKK KPSTGLVKME KEEEQYLSPN GNKEKKNHER EETEFDEQRS  300
NKHSAVYEEE AAELSEMFDK ILICPHDHIG GRPHCHERRE FLNNEVKEKQ KPDGQNNVSN  360
GGGKAATKKP SNNSSNNTTT KRAVDLRTLL VLCAQAVSTD DRRTAREYLK QIRRHSSPFG  420
DGSQRLAHCF ANGLEARLDG NGTQIYNALS SKRTSAIDML KAYQVYVSSC PFQKMANIFA  480
NHTILDLARK ATSTLHIIDF GILYGFQWPT LIFRLSKLPG GPPKLRITGI ELPQPGFRPA  540
ERVHETGRHL AKCCERFNVP FEYNAIAQKW DTVRTEDLKL RNDELIVVNS MFRFKNLLDE  600
TVALNNPRDS VLKLIRRINP SLFLQAIVNG SYSGPFFVTR FREALFHYSS LFDAFDVNLA  660
REDQMRLMFE KQWLGRESVN VIACEGAARV ERPESYKQWQ GRNMRAGFRQ VPPDPFVMGK  720
MRHRLKERYH EDFVLDEYGC WALQGWKGRI LYASSCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein