PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68867.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 195aa    MW: 21249.2 Da    PI: 7.3108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.42.5e-43301291100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+aela++k+
  OWM68867.1  30 PCAACKILRRKCSEKCVLAPYFPPTDPVKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQINELQAELAKAKA 128
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  OWM68867.1 129 E 129
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGCPGRADSE LPRSPSSPRS PAPASMIMSP CAACKILRRK CSEKCVLAPY FPPTDPVKFT  60
IAHRVFGASN IIKFLQELPE SQRADAVSSM VYEASARIRD PVYGCAGAIC QLQKQINELQ  120
AELAKAKAEM SSMKTQHAHL MALICTVEMD RPSPSSSTEQ SDDSNISRAV NETNPSYILD  180
HDNYLGSSWP GSLWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-57LBD family protein