PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM68879.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 756aa MW: 83925.8 Da PI: 6.6473

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM68879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.2	4.2e-25	162	263	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv++++L +gD v+F + +++el+ OWM68879.1 162 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSSFVSQKNLVSGDAVLFL--RGEDGELR 257 99**************************963.3445679********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ OWM68879.1 258 LGIRRA 263 ***996 PP
2	Auxin_resp	106.5	2.9e-35	288	369	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pr+s+ eF+v+++k++k++ + + vG+R++m+++ +d +err+sG+v+g+ ++d++rWpnSkWr+L OWM68879.1 288 VANALSTKSMFRVFYCPRVSHGEFIVPYQKYVKSMANLIRVGTRVRMRLDVDDPPERRYSGVVTGIGNTDSYRWPNSKWRCL 369 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MELIDLNHAV SEAETENNAC CNGDSCVSGK GSGCDSCFST SSSSSTTYSE LWHACAGPLT 60 CPPKKGNVVV YFPQGHLEQL APSSPCLPIK VLNFDLPPQI FCRVVDVQLL ANKENDDVYT 120 QLILLPQQEL VGLNLEGAEL EELGSNDESN GVSPPRSTPH MFCKTLTASD TSTHGGFSVP 180 RRAAEDCFPP LDYKQQRPSQ ELIAKDLHGV EWKFRHIYRG QPRRHLLTTG WSSFVSQKNL 240 VSGDAVLFLR GEDGELRLGI RRAIRPRNVL PNLIAGNQSS DSSSLALVAN ALSTKSMFRV 300 FYCPRVSHGE FIVPYQKYVK SMANLIRVGT RVRMRLDVDD PPERRYSGVV TGIGNTDSYR 360 WPNSKWRCLM VRWDEDIGTS EHQSRVSPWE IDPSVSIPPL SIQSSPRMKK LQTGVFGLLD 420 SEESLRSSKV LQGQENESLA SPFRIGDART RVLDFEMQNP AYRSLAPVQG RKAYNDGFEL 480 SRVHHQAYMG FKEANQFLEV LQGREICKLK SLAGKPEFKV VAGKPFLSCS SLNQDQPRKF 540 NTSPPQSLYV SYGEVQSGQT LAAHCFMRNI ENGLTKIEEI SASPNPWKHQ VMQNNVNRDR 600 VSGCKLFGFQ LTAEEAPNSA SQSTGKRSCT KVHKQGSLVG RAIDLSRLTN YGDLLDELEK 660 LFGMKGLLRD PNRGWRILYT DSENDVMAIG DEPWHEFIDV VSKIHIYTEE EVEKMTAAGI 720 MTDDTQSCLE QSPAVMEASK SSSIGGPDSS PTVLSI

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MELIDLNHAV SEAETENNAC CNGDSCVSGK GSGCDSCFST SSSSSTTYSE LWHACAGPLT  60
CPPKKGNVVV YFPQGHLEQL APSSPCLPIK VLNFDLPPQI FCRVVDVQLL ANKENDDVYT  120
QLILLPQQEL VGLNLEGAEL EELGSNDESN GVSPPRSTPH MFCKTLTASD TSTHGGFSVP  180
RRAAEDCFPP LDYKQQRPSQ ELIAKDLHGV EWKFRHIYRG QPRRHLLTTG WSSFVSQKNL  240
VSGDAVLFLR GEDGELRLGI RRAIRPRNVL PNLIAGNQSS DSSSLALVAN ALSTKSMFRV  300
FYCPRVSHGE FIVPYQKYVK SMANLIRVGT RVRMRLDVDD PPERRYSGVV TGIGNTDSYR  360
WPNSKWRCLM VRWDEDIGTS EHQSRVSPWE IDPSVSIPPL SIQSSPRMKK LQTGVFGLLD  420
SEESLRSSKV LQGQENESLA SPFRIGDART RVLDFEMQNP AYRSLAPVQG RKAYNDGFEL  480
SRVHHQAYMG FKEANQFLEV LQGREICKLK SLAGKPEFKV VAGKPFLSCS SLNQDQPRKF  540
NTSPPQSLYV SYGEVQSGQT LAAHCFMRNI ENGLTKIEEI SASPNPWKHQ VMQNNVNRDR  600
VSGCKLFGFQ LTAEEAPNSA SQSTGKRSCT KVHKQGSLVG RAIDLSRLTN YGDLLDELEK  660
LFGMKGLLRD PNRGWRILYT DSENDVMAIG DEPWHEFIDV VSKIHIYTEE EVEKMTAAGI  720
MTDDTQSCLE QSPAVMEASK SSSIGGPDSS PTVLSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein