PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69113.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 302aa MW: 33292.2 Da PI: 5.0137

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.6	1.2e-17	33	108	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ s ++++v+ ++fdfl ++v + OWM69113.1 33 KARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSSHLKQCVQTFNVFDFLRETVSK 108 58*********************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MRKKLDTRFP AVGHFVMLGR LRFFEVRVGA YVKARIKKIM QADEDVGKIA MAVPLLVSKA 60 LELFLQDLCD RTYEITLKRG AKTLNSSHLK QCVQTFNVFD FLRETVSKVP DLGGSETVSE 120 DRSASVLKRR RVVGDEENDS DGELKKGRMI EAGHSTSSGR GRGRGRGRGR GRGTRAAERD 180 MAVHDDKLED GLDGSKPDVK SCDLERKDSE TVGNESNENA QAPVRNFDLN VDLDENGDLK 240 DAAAPAPAPA PASLGAESNH EVKHEEFQGW SLSEVEKMAI DPMQLTGLNG TVEEDEDYDE 300 EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	132	KRRRV
2	160	169	RGRGRGRGRG
3	160	170	RGRGRGRGRGR
4	162	171	RGRGRGRGRG
5	162	172	RGRGRGRGRGR
6	164	173	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-59	NF-YC family protein