PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69237.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 295aa    MW: 31238.1 Da    PI: 9.4711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07106129427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C+ +     Ck+Gd+C+FaHg+
  OWM69237.1 106 RMCNKYNTAEGCKFGDKCHFAHGE 129
                 78********************96 PP
2zf-CCCH34.92.6e-11262286126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC++f + GtC +G+rC+FaHg
  OWM69237.1 262 FKTKLCDNFTK-GTCTFGERCHFAHG 286
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MEYSGGRKRW RSDGPLNGNG GAKKYKQEGE SFPSGLGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIKA VSQMLGNPNL LPPTPRNSAP PASFPDAPSP SAVKGRMCNK YNTAEGCKFG  120
DKCHFAHGEW ELGKPSAPSY DDPRAMSRGG MGRYEPPPPA MAAGFGASAT AKISINASLA  180
GAIIGKNGVN SKQICRLTGA KLSIRDHESD PSLRNIELEG SFEQIQQASA MVRELIGNAG  240
SSSGPAGRNN AMGHHHHGRS NFKTKLCDNF TKGTCTFGER CHFAHGADEL HKSGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-55C3H family protein