PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69275.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 339aa MW: 37344.5 Da PI: 7.1022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.8e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++k+ G g+W+t +++ g+ R++k+c++rw +yl OWM69275.1 30 RGPWTPEEDELLSSYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 77 89****************************99**********97 PP
2	Myb_DNA-binding	46.9	6.5e-15	88	128	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OWM69275.1 88 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MRSPSSAAAA GAGGGGGKTT PCCSKVGLKR GPWTPEEDEL LSSYIKREGE GRWRTLPKRA 60 GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI 120 KNYWNTHLSK KLISQGIDPR THKPLNQDQR TDNSNNESPD ANSTAKEVSS SKKPLINHSI 180 PSPSPTSNPN SASSGIEEID KELLPDPNPT TEFENSFPIN NLLPKYTDGM SNTMMRIGSH 240 VLASHEAEED INNYCTDDVF SSFLNSLINE EAFTASHHSQ LHQQPPFHVA SSSSDTLMIS 300 NPISALGLGW ESAIMSSTFS QNNSEAPKRV DNYGNGHIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-85	MYB family protein