PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69475.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 72aa    MW: 8148.68 Da    PI: 10.8048
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-111141333
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCda 33
                i  +  r vtf kR+  +lKK +E S+LC++
  OWM69475.1 11 IGKEKSRRVTFEKRKSSLLKKVNEFSILCGV 41
                55677899*********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    
MGRGRLALKL IGKEKSRRVT FEKRKSSLLK KVNEFSILCG VIIYGTPTIN DRPDVPKICP  60
PNPDEVARII DR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.25e-12MIKC_MADS family protein