PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69476.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23066.4 Da    PI: 8.6215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-121242434
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdae 34
                  +s r +tf kR++g++KK eE S+LC+++
  OWM69476.1 12 TKDSLRRTTFEKRKKGLMKKLEEFSILCGVD 42
                56899***********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MGHGKLVLKF LTKDSLRRTT FEKRKKGLMK KLEEFSILCG VDPERVKQVI DQYFSEGVDR  60
CKKHAKDLRE YFMTSNGAVR AEDETGGMKK RHLAAKESAV MNTSGMVPMQ MDDFKYDNSV  120
HMHMDDYMPL DGIKPPLEFQ QLAIPYLPPL MDPNMMINNS MMWSKVGDSS ANTSNSNSIL  180
ANHHNENNYY YNYSLTHRPG S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RRTTFEKRKKGLMKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-10M-type_MADS family protein