PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69729.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 495aa MW: 53020.6 Da PI: 9.864

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OWM69729.1 85 FICEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	11.9	0.00069	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + OWM69729.1 162 WKCEKCSKKYAVQSDWKAHSKIC 184 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MNLMSGDAFS IPTSLPSFPQ VDLANPNPSP NPSATAGNAP AAKKRRNQPG TPGKPTHTLS 60 TPVFSYPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSDKD 120 VIRKKVYICP EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH 180 SKICGTREYK CDCGTLFSRK DSFITHRAFC DALADESSKL TSIAATNLSF GNTAAGNENR 240 INNFAGLPHG FPSRRVQDIA GIPQQSGSLL HPDIGGFSEM AMMGSGANNL FGTSTMENYG 300 MIPNSAGLSL SVLPQIGSKE ESGGNSLGSN SGGLMGGRTP YNSESNIGDH QLSKLQQKPP 360 PAPMSATALL QKAAQMGSTR SNPGSVFGSS FGLMSSSSSS SSSSQSRSTR SPEQLMMSGG 420 LVKHGHADHH QQQRFGGLSS MDLNLTRDFL GMGGDHGGAG GPHDPSNNLF FHEELAKFAS 480 SIGSGLAQTF VTNPQ

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MNLMSGDAFS IPTSLPSFPQ VDLANPNPSP NPSATAGNAP AAKKRRNQPG TPGKPTHTLS  60
TPVFSYPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSDKD  120
VIRKKVYICP EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH  180
SKICGTREYK CDCGTLFSRK DSFITHRAFC DALADESSKL TSIAATNLSF GNTAAGNENR  240
INNFAGLPHG FPSRRVQDIA GIPQQSGSLL HPDIGGFSEM AMMGSGANNL FGTSTMENYG  300
MIPNSAGLSL SVLPQIGSKE ESGGNSLGSN SGGLMGGRTP YNSESNIGDH QLSKLQQKPP  360
PAPMSATALL QKAAQMGSTR SNPGSVFGSS FGLMSSSSSS SSSSQSRSTR SPEQLMMSGG  420
LVKHGHADHH QQQRFGGLSS MDLNLTRDFL GMGGDHGGAG GPHDPSNNLF FHEELAKFAS  480
SIGSGLAQTF VTNPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	125	KLKQRSDKDVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein