PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69783.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 261aa    MW: 30188.7 Da    PI: 6.5057
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601056.2e-336103198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aC  C ++r++C++dC+++pyfp +qp+ ++n+ +lFG++n+ kl++++++e+ ed+m+s++ye +  a+d vyG++g + klqqq++++++el++++
  OWM69783.1   6 ACGLCHHQRKRCPQDCPFRPYFPVDQPELYRNAIRLFGVANLKKLMAKVQPEQYEDTMTSIIYEVNRHAEDSVYGCYGALIKLQQQVARAEQELKAIN 103
                 6********************************************************************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MVKGRACGLC HHQRKRCPQD CPFRPYFPVD QPELYRNAIR LFGVANLKKL MAKVQPEQYE  60
DTMTSIIYEV NRHAEDSVYG CYGALIKLQQ QVARAEQELK AINSWIASFR RLSEQPDDHD  120
HRCHPLSLPS NFWVEYTHGH DTVIQSDAAA SLEIMKSSMV NQQSRNQDRE SSVVNEQPHR  180
CNLEASMVNE RTHRSNLDPV IDEWPRYTER NLGNQNPLIQ SDQRYAVAQQ LPRALEKEIA  240
NHEDEPSRPL METTHSDING N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-26LBD family protein