PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69890.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 233aa MW: 25349 Da PI: 8.8737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.7e-42	47	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ OWM69890.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRA 145 7***********************************************************************************************998 PP DUF260 100 e 100 e OWM69890.1 146 E 146 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MSRERERLDE IGKKIKREAD VAPSRLMGRR HMLSPQSQAG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVPESQR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQVQSLQAEL NAVRAEILKY KYREANVLPS SSHMTLLSSG PGVNIVSVAA 180 PPPILQPQPP SPQPSSLPPP AAISCSSVFT QPTTSSCTTD FNSISSENVS YFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-88	LBD family protein