PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69921.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 173aa MW: 19100.8 Da PI: 7.0825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.6	2.9e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C+kdC++apyfp+++p++fa+vhk+FGasnv+k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ OWM69921.1 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHRFAIVHKVFGASNVSKMLQELPVHQRVDAVNSLVYEANARVRDPVYGCVGAISYLQNQVAQLQMQLAVAQA 104 7***********************************************************************************************998 PP DUF260 100 e 100 e OWM69921.1 105 E 105 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MGGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHRFAIVHK VFGASNVSKM LQELPVHQRV 60 DAVNSLVYEA NARVRDPVYG CVGAISYLQN QVAQLQMQLA VAQAEILCIQ VQQEPVIMPT 120 SSQLAATIDG TDEKSAFLLH NNLPAQYLNF ASSSNVTHES LKRESFFGHD MVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-63	LBD family protein