PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69937.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 196aa    MW: 21236.9 Da    PI: 7.4191
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.92.3e-40141131100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++++l+++la++++
  OWM69937.1  14 SCAACKLLKRRCGPSCIFAPYFRSDEPKKFAKVHKVFGASNVSKILGEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIAILQRKMAELQHDLAVARA 112
                 6**********************************************************************************************9987 PP

      DUF260 100 e 100
                 +
  OWM69937.1 113 R 113
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MPQRSGHEAR SSSSCAACKL LKRRCGPSCI FAPYFRSDEP KKFAKVHKVF GASNVSKILG  60
EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIAILQRKM AELQHDLAVA RARLARAAAT  120
AAATSSVGTS GGLEYYDNPH VIVNNVGPAF GDVGYYSCGS GPYNESFSQV PMEWSQDFGG  180
GMSDYFGHSP FMLGYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.19e-60LBD family protein