PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69948.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 632aa MW: 68289.1 Da PI: 7.7842

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.1	1.7e-09	252	273	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg OWM69948.1 252 PCPEFRKGGSCPKGDSCEYAHG 273 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MDGEYLKKND GSPAKGSLLL ELAASDGLLD FKREVEEKGC DIDGAGLWYG RRIGSKKMGF 60 EERTPLMIAS LFGSIRVLKY MLGTGRIDVS QACGSDKVTA LHCAVAGGSG SSVEAVKLLL 120 DASADVNCVD GNGNKPIDVI ASSFKSNCYS SRRKAVELLL GGHRSLDGEA VDSSSESDAE 180 EKVASKKEYP VDISLPDINN AIFSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR 240 RDPRKYPYTC VPCPEFRKGG SCPKGDSCEY AHGVFESWLH PAQYRTRLCK DETGCSRKVC 300 FFAHRPEELR PVYASTGSAL PSPKSYSAGA LDMGSIPAIS LGLPAATSTP PMSPLAGASP 360 SPKSANLWQN KVKLTPPTLQ LPGSRLKTAL SARDLGLEME LMEEIPRLSS PSHFALSGDL 420 KPTNLDDIFG SIDSPMLSQL QGMSLKQSTP TQLQSPTGLQ IRRSSYPSNN LPSSPVRKHS 480 PPFGFDSSSA VATAVMNSRS AAMTKRSQSF IDRGAMTQNS IPAPIKPSNF SDWASPNGKL 540 DWGVHGDELN KLRKSASFGF RSNSNTAASM GPAALDEPDV SWVNTLVKDV PPANAGVWGA 600 ESQQYINRGK GAREMFSPWG EQLYIEPEQM VA

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MDGEYLKKND GSPAKGSLLL ELAASDGLLD FKREVEEKGC DIDGAGLWYG RRIGSKKMGF  60
EERTPLMIAS LFGSIRVLKY MLGTGRIDVS QACGSDKVTA LHCAVAGGSG SSVEAVKLLL  120
DASADVNCVD GNGNKPIDVI ASSFKSNCYS SRRKAVELLL GGHRSLDGEA VDSSSESDAE  180
EKVASKKEYP VDISLPDINN AIFSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKYPYTC VPCPEFRKGG SCPKGDSCEY AHGVFESWLH PAQYRTRLCK DETGCSRKVC  300
FFAHRPEELR PVYASTGSAL PSPKSYSAGA LDMGSIPAIS LGLPAATSTP PMSPLAGASP  360
SPKSANLWQN KVKLTPPTLQ LPGSRLKTAL SARDLGLEME LMEEIPRLSS PSHFALSGDL  420
KPTNLDDIFG SIDSPMLSQL QGMSLKQSTP TQLQSPTGLQ IRRSSYPSNN LPSSPVRKHS  480
PPFGFDSSSA VATAVMNSRS AAMTKRSQSF IDRGAMTQNS IPAPIKPSNF SDWASPNGKL  540
DWGVHGDELN KLRKSASFGF RSNSNTAASM GPAALDEPDV SWVNTLVKDV PPANAGVWGA  600
ESQQYINRGK GAREMFSPWG EQLYIEPEQM VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein