PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70034.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 229aa    MW: 25275.4 Da    PI: 4.5328
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp + r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++e++ l+
  OWM70034.1   7 SCGACKFLRRKCTSECVFAPYFCYDQaANHFAAVHKVFGASNVSKLLLHLPVQMRSDAAVTISYEALARIRDPIYGCVAHIFALQEQVANLQEEIEILG 105
                 6************************978*******************************************************************9987 PP

      DUF260  99 ee 100
                 ++
  OWM70034.1 106 TQ 107
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAANHFAAV HKVFGASNVS KLLLHLPVQM  60
RSDAAVTISY EALARIRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGILSWGGSH  120
VNNNNFVSNA GSHFPQTDPI NLQFYQDQYD PVFPYAGNPP ESRDLGEAVL TGNRIDNNNS  180
EFPPLYGGEV LDQFCEDTDP SILERLFDGV DKEIFTLYPW LNNGTAPGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-61LBD family protein