PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70127.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 363aa    MW: 41500.6 Da    PI: 4.9573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0690113226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC f+ + G+C  G +CkF+H+
  OWM70127.1  90 KSILCEFYKA-GQCTKGFKCKFSHD 113
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MPPKQQSKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LHLTVQAKPD PSKIAAKKKK  60
EEEKAREKEL NDLFKIAVSQ PKVPVGVDPK SILCEFYKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQETMEDWDQ ETLEKVVESK KNEYNQNKPT EIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALIE EEAEKMPIED EIEDQRSKLT KSTPMTPELF  240
MEWKTKKTEE REAGLAALRA ERAKNDRMSG RELFLSDASL FVDDAEAYEK YQREEEPEAA  300
SEKAKENSAQ SEASSSREGA AADPGETLPE DDDDDELDMD ELNELEASLS RTSIQIREPG  360
IEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-155C3H family protein