PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70153.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 224aa    MW: 24168.6 Da    PI: 6.0859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.32e-41541531100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C ++Cvlapyfp ++p kf ++h++FGa+n++kll++lpe++r da+ s+vyeA+ar+rdPvyG+ g+i++lq+q+++l+aela++++
  OWM70153.1  54 PCAACKILRRRCIDKCVLAPYFPPTDPYKFTIAHRVFGAANIIKLLQELPESQRADAVISMVYEANARLRDPVYGCSGTISRLQKQISELQAELAKMQA 152
                 7**********************************************************************************************9987 PP

      DUF260 100 e 100
                 e
  OWM70153.1 153 E 153
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MVIVNAENIP SAPIHPPPPP ASSPPPTSAP TALPLSTSPP ASNNSSAVPV VISPCAACKI  60
LRRRCIDKCV LAPYFPPTDP YKFTIAHRVF GAANIIKLLQ ELPESQRADA VISMVYEANA  120
RLRDPVYGCS GTISRLQKQI SELQAELAKM QAESVNIQCQ NSHLLALLCM EMAGTQQAGD  180
PTSNCNNVTM HQQQQPQQQQ YMIDTSGFLD DSSLSSGWET LWGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-62LBD family protein