PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM70205.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 1334aa MW: 148205 Da PI: 5.99

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM70205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	1305	1331	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ +Cg sF+ s+++rH r+ H OWM70205.1 1305 YKCKvaNCGLSFRFISDYNRHRRKtgH 1331 9**********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1334 aa Download sequence
MGNVEIPNWL KGLPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV 60 FSNLNTSLSK CPDIGPDVSL PGLGSSSKTG PSNCEKEGDV RAVFTTRQQE LGQSSKRPKG 120 AGNNPQQLGG HKQVWQSGEA YTLEQFEAKS KALARTLLGA IKEVSPLAVE ALFWKAATEK 180 PIYVEYANDV PGSAFGEPEE LSRYLRRRRR TRTRTSYQRQ SNKDEAGDVK DPCTSDSCEK 240 KDTYARINES ASLEICDGST TPSDSPFLDQ SLTGYRKSHS SNGSSNSEME GSAGWKLSNS 300 PWNLQVIARS PGSLTRFMPD DIPGVTSPMI YIGMLFSWFA WHVEDHELHS MNFLHMGSPK 360 TWYAVPGDYA LDFEEIIRSD AYGGNIDQLA ALSLLGEKTT LISPEVIVAS GIPCCRLIQN 420 PGEFVVTFPR AYHIGFSHGF NCGEAANFAT PQWLRFARDA AVRRAAMNYL PMLSHQQLLY 480 LLTMSFVSRV PRSLLPGARS SRLRDRQREE RELLVKKAFV EDMQKENHLL SSLLGKDSTY 540 LAVVWNPNML PSLNNHSGSP DKTASVPTTQ KENVACDSSD HNGLSGELSM YVEAQNELDM 600 ENADLFFDFQ VDSGTLACVA CGILGFPFMC VIQPSETAAL ELPSSDAIPS APHPDIFQEE 660 LAITPMTDFR EGWNTSNYQK MKAYAAVIAG ETSTCFDYEE IPLHIATQAD LNLIELAIID 720 DENDKYGVDW TSNLGINLRY CVRIRKNYPS KRVQHALALG GLFSADSIPT SDVLGVKWKS 780 RKSRSKPRVD HPQNSEPSKS LQSSEVTLQK NTDSHEVNKV KNVIQYSRRN SKLKSRDSEK 840 LSSRNLGNEI KCASLGVSAE VVEHEVRVLE ALGDMDSGFL PGQVANSPAG TSQFAGSIEV 900 QIISQTSDVM EVEGGRSTSE VQDEEEESET SHETSCSNPS EAKTSENIEI QREHIGSQEG 960 VSDLADKDCE GHGESRSMDV IGVNEIAEPM HSQTCDVCSE MRTAHSREDK ASDDSLSCAE 1020 DNNNMGSVEK CPEASSTAYA EKEVCHRSPS GSKSQAAMVE NNNDPVAEKE YNEALEEIRD 1080 EGRLIDSAGS DDESHRADCT TSEVRDDKLE CGHRSDRDLD GNEVEVSSSQ DHMQPGTVDA 1140 PVSETRKKRK RKSEVEMIAD GKLLTIGFVR SPCEGLRPRS RSGSHIISAE GDEKPRKKVR 1200 QRLNEKVGLY DTKEITGTSR AYRCNLEGCR MIFETKEELS MHRRNRCHHE GCGKKFSSHK 1260 YAILHQRVHE DDRPLKCPWK GCRMSFKWAW ARTEHIRVHT GERPYKCKVA NCGLSFRFIS 1320 DYNRHRRKTG HYVS

Sequence ? help Back to Top

Protein Sequence Length: 1334 aa Download sequence

MGNVEIPNWL KGLPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
FSNLNTSLSK CPDIGPDVSL PGLGSSSKTG PSNCEKEGDV RAVFTTRQQE LGQSSKRPKG  120
AGNNPQQLGG HKQVWQSGEA YTLEQFEAKS KALARTLLGA IKEVSPLAVE ALFWKAATEK  180
PIYVEYANDV PGSAFGEPEE LSRYLRRRRR TRTRTSYQRQ SNKDEAGDVK DPCTSDSCEK  240
KDTYARINES ASLEICDGST TPSDSPFLDQ SLTGYRKSHS SNGSSNSEME GSAGWKLSNS  300
PWNLQVIARS PGSLTRFMPD DIPGVTSPMI YIGMLFSWFA WHVEDHELHS MNFLHMGSPK  360
TWYAVPGDYA LDFEEIIRSD AYGGNIDQLA ALSLLGEKTT LISPEVIVAS GIPCCRLIQN  420
PGEFVVTFPR AYHIGFSHGF NCGEAANFAT PQWLRFARDA AVRRAAMNYL PMLSHQQLLY  480
LLTMSFVSRV PRSLLPGARS SRLRDRQREE RELLVKKAFV EDMQKENHLL SSLLGKDSTY  540
LAVVWNPNML PSLNNHSGSP DKTASVPTTQ KENVACDSSD HNGLSGELSM YVEAQNELDM  600
ENADLFFDFQ VDSGTLACVA CGILGFPFMC VIQPSETAAL ELPSSDAIPS APHPDIFQEE  660
LAITPMTDFR EGWNTSNYQK MKAYAAVIAG ETSTCFDYEE IPLHIATQAD LNLIELAIID  720
DENDKYGVDW TSNLGINLRY CVRIRKNYPS KRVQHALALG GLFSADSIPT SDVLGVKWKS  780
RKSRSKPRVD HPQNSEPSKS LQSSEVTLQK NTDSHEVNKV KNVIQYSRRN SKLKSRDSEK  840
LSSRNLGNEI KCASLGVSAE VVEHEVRVLE ALGDMDSGFL PGQVANSPAG TSQFAGSIEV  900
QIISQTSDVM EVEGGRSTSE VQDEEEESET SHETSCSNPS EAKTSENIEI QREHIGSQEG  960
VSDLADKDCE GHGESRSMDV IGVNEIAEPM HSQTCDVCSE MRTAHSREDK ASDDSLSCAE  1020
DNNNMGSVEK CPEASSTAYA EKEVCHRSPS GSKSQAAMVE NNNDPVAEKE YNEALEEIRD  1080
EGRLIDSAGS DDESHRADCT TSEVRDDKLE CGHRSDRDLD GNEVEVSSSQ DHMQPGTVDA  1140
PVSETRKKRK RKSEVEMIAD GKLLTIGFVR SPCEGLRPRS RSGSHIISAE GDEKPRKKVR  1200
QRLNEKVGLY DTKEITGTSR AYRCNLEGCR MIFETKEELS MHRRNRCHHE GCGKKFSSHK  1260
YAILHQRVHE DDRPLKCPWK GCRMSFKWAW ARTEHIRVHT GERPYKCKVA NCGLSFRFIS  1320
DYNRHRRKTG HYVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	RRRRRT
2	1146	1151	RKKRKR
3	1146	1152	RKKRKRK
4	1147	1152	KKRKRK
5	1194	1200	KPRKKVR
6	1196	1203	RKKVRQRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein