PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70652.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 256aa    MW: 29106.6 Da    PI: 8.6794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lv++++ +  g W++ a+  g++Rt+k+c++rw++yl
       OWM70652.1 15 KGPWTMEEDSILVNYIANHSEGAWNSLAKSAGLKRTGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding57.62.9e-1868111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ +lG++ W++Ia++++ gRt++++k++w++
       OWM70652.1  68 RGNITPEEQLLIIELHSKLGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
3Myb_DNA-binding30.96.4e-101511732246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                      g W++Ia++++ gRt++++k++w++
       OWM70652.1 151 G-WSKIAKYLP-GRTDNEIKNHWRT 173
                      4.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MEEKGCSSEG PEVRKGPWTM EEDSILVNYI ANHSEGAWNS LAKSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLII ELHSKLGNRW SKIAKHLPGR TDNEIKNYWR TKIHKHINKH  120
RDTSVLYNCD VSKQYKHQGD TGWMDIGTTT GWSKIAKYLP GRTDNEIKNH WRTKIYKHIN  180
KHGDSSVLYN RDTSEQYEHQ GDTGWMVIET TTGYPTGTCF SQPSTCQGNT EVSGASSLAE  240
PGTSLVGWSL EDLLSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-68MYB family protein