PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70793.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 210aa    MW: 22238.3 Da    PI: 8.5095
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.2e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++Cvl+ ++     p+ q +++ +++++FG+s +l+l++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++
  OWM70793.1   2 SCNGCRVLRKGCSESCVLRTCLqwiptPEGQGNATLFLARFFGRSDLLSLIAAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQAAVDT 100
                 6************************999999****************************************************************9998 PP

      DUF260  95 all 97 
                 +l 
  OWM70793.1 101 VLS 103
                 765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSCNGCRVLR KGCSESCVLR TCLQWIPTPE GQGNATLFLA RFFGRSDLLS LIAAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLSGGALQPL PGILSSALPR  120
DELSTSTCRG QTLLGHQFTS SSPAAQGDLN NCNLGLNSAN KFSGKRRGKR SHFMENWPVK  180
TASTLSSEVS EVATVSSGGG QETKLLNLFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-61LBD family protein