PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71311.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25875.8 Da    PI: 4.7719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211963145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie+k  r+vtf+kRr g++ KA+ELSvLC+aeva+i +s++g+
  OWM71311.1 19 KKIEDKNAREVTFTKRRGGLFRKASELSVLCGAEVAIIAYSPHGN 63
                68****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MAEDGGGRRG RSRRRTELKK IEDKNAREVT FTKRRGGLFR KASELSVLCG AEVAIIAYSP  60
HGNPFVYGAP SASKVLRRFL GSTSAVEDSK SGDAMSFSCG ADPRLSEYMR REREMLSRLE  120
EARTRKIEAE CKGQPQRWWE DPMEDIAEEE ELEHYIECVE RLMEKATQKA EEMRNNTAPT  180
STAFSPASAP MASASSTVVD TLGTGVLDTS NGVEAVEEEE IGLGDEELGS LRAAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-22M-type_MADS family protein