PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71325.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 613aa MW: 68172.9 Da PI: 10.2705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.4e-15	427	474	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e ErrRR+riNs +++Lr+llP++ kK +Ka+ L +v+++++L OWM71325.1 427 RSHKETERRRRQRINSHLSTLRSLLPNP----TKKTDKASLLAGVVHHVRQL 474 68***********************9....799*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MLQDTLKSSP PENKVSAQPI FGFVEKWSSE QWPENNFINL EIPVEIPCYG TYCINLFRLI 60 WRTVYVIITA LLAMIFPFFN DFLGLIGAAS FWPLTVYFPV EMHIARTKMK KYSFTWTWLK 120 ILSWGCLVVT LVAAAGSVQG AAKAGTGASK NIRPNRRPAR GNLDVEDTTG KEAAAATPET 180 KAKSKGRTSR KDKQDGTSNE PEGTRTLEIK QESVSGSLKS QKRTAAEKAK VGISRQAQAN 240 PEQDGHQKEH LPSKGRISIK EEKATAENDE GQKKRRLSTL YADERLKDKQ PEQEKPDSKK 300 AKMSSAKKEG KSEVPKLAES VKKEKPVSPT RAGLLLVCFI QAPKLLAKPE ELRTRRLKVM 360 KTLGLIGPSV LASPSSHLPY ASSDPHPTLF LNKIKMIQSS NEMIGASNID SVMDQDDDGQ 420 KPAEPSRSHK ETERRRRQRI NSHLSTLRSL LPNPTKKTDK ASLLAGVVHH VRQLRQQLAA 480 FSRQHTDPSS SCSCSRLALA DPEQWPFPGD SDEATLISCH GSGLLKVTLC CDDRPGLNGE 540 LARTFRAFHA KEIRAEMASS GGRAKLEVLV EWVGRQDEDR VSGLKRALEA VVENRARRLS 600 YRNKQARTSY ELS

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MLQDTLKSSP PENKVSAQPI FGFVEKWSSE QWPENNFINL EIPVEIPCYG TYCINLFRLI  60
WRTVYVIITA LLAMIFPFFN DFLGLIGAAS FWPLTVYFPV EMHIARTKMK KYSFTWTWLK  120
ILSWGCLVVT LVAAAGSVQG AAKAGTGASK NIRPNRRPAR GNLDVEDTTG KEAAAATPET  180
KAKSKGRTSR KDKQDGTSNE PEGTRTLEIK QESVSGSLKS QKRTAAEKAK VGISRQAQAN  240
PEQDGHQKEH LPSKGRISIK EEKATAENDE GQKKRRLSTL YADERLKDKQ PEQEKPDSKK  300
AKMSSAKKEG KSEVPKLAES VKKEKPVSPT RAGLLLVCFI QAPKLLAKPE ELRTRRLKVM  360
KTLGLIGPSV LASPSSHLPY ASSDPHPTLF LNKIKMIQSS NEMIGASNID SVMDQDDDGQ  420
KPAEPSRSHK ETERRRRQRI NSHLSTLRSL LPNPTKKTDK ASLLAGVVHH VRQLRQQLAA  480
FSRQHTDPSS SCSCSRLALA DPEQWPFPGD SDEATLISCH GSGLLKVTLC CDDRPGLNGE  540
LARTFRAFHA KEIRAEMASS GGRAKLEVLV EWVGRQDEDR VSGLKRALEA VVENRARRLS  600
YRNKQARTSY ELS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	302	KKRRLSTLYADERLKDKQPEQEKPDSKKAK
2	273	311	KKRRLSTLYADERLKDKQPEQEKPDSKKAKMSSAKKEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	6e-21	bHLH family protein