PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71347.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27875.1 Da    PI: 4.724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.4e-221963145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie+k  r+vtfskRr g++ KA+ELSvLC+aeva+i +s++g+
  OWM71347.1 19 KKIEDKNAREVTFSKRRGGLFRKASELSVLCGAEVAIITYSPHGN 63
                68****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MAEGGGGGRG RRRRRTELKK IEDKNAREVT FSKRRGGLFR KASELSVLCG AEVAIITYSP  60
HGNPFVYGAP SASKVLRRFL GSTSAVEDSE SGDAMSFSCG ADPRLSEYMR QERETLSRLE  120
EARKRKLEAE CKGQPQRWWE DPIEDMEEEE LEHYIECAER LMEKATQKAE EMRNNTAPTS  180
TAISPASAPM ASASSTVVDT LGTAVFDTRN GVEAVVEEEL GLGDKELQSQ SSLLKEFEYD  240
DVGYMPLWSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116RRRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-22M-type_MADS family protein