PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71348.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27631.9 Da    PI: 4.8311
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.4e-222170150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ienk  r+vtf+kRr g++KKA+EL vLC+a+va+i +s++g+ + +s
  OWM71348.1 21 KKIENKFAREVTFTKRRGGLFKKASELAVLCGADVAIIAYSPHGNPFVFS 70
                68*****************************************9876666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MAEGGGGGRR PRNCWRRTEL KKIENKFARE VTFTKRRGGL FKKASELAVL CGADVAIIAY  60
SPHGNPFVFS SSSSTDGVLR RFIGSPTSAA GEDSGVMPLS MSCEDRLSEY RRQEKEALSR  120
LNEAKKKQQE ASGKGKPGWW WDNPIEDLEA EELECYIECV ERLMEKASQK AEEMRTNPVH  180
TSATTSPASA SMASAGRNMV DTLDTGLFET SNGAEAAVKE EFGMGDEELE SLSSLLKEFE  240
HDDVGCMPLW S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-21M-type_MADS family protein