PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71351.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7774.13 Da    PI: 11.1381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstgkly+++s
  OWM71351.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLYDFASS  60
RIVNILKSTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.16e-37MIKC_MADS family protein