PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71433.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 349aa    MW: 38692 Da    PI: 7.9671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.2e-15272297126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tG C+yGd C+FaHg
  OWM71433.1 272 FKTELCNKWQETGACPYGDHCQFAHG 297
                 79***********************8 PP
2zf-CCCH19.71.5e-06310335126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++  C+yG rC+F H+
  OWM71433.1 310 YKTEVCRMVLAGDNCPYGHRCHFRHS 335
                 9**********55**********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MEKEASPPSD PNSTTTTVST SSPPASILAP HSPPSVHTDD AQKKQQFSTN FTALYRSIFP  60
PKFSSPSDTT TSSPPPRSSA SSSDLNQYAS GKSSATKSDA DHRLEQARLV VDYENLCDRY  120
SICRSELQDL TNEISALRRE NASLRVTNKE LAKLLSLSVS SQSTMHDCFR RLNLVESGSD  180
FSGDEQSTYS PTSVVEQSRF ERTDPERVWL PKSISVRSSS YLKANQSATN SGSSSRTASQ  240
LRAATELEGK VQQRMYLPGA KKELEVYSQG MFKTELCNKW QETGACPYGD HCQFAHGIAE  300
LRPVIRHPRY KTEVCRMVLA GDNCPYGHRC HFRHSLTEQE MMLAGASPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-67C3H family protein