PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71471.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 272aa MW: 31134.1 Da PI: 5.6666

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G+++W+++++ g+ R++k+c++rw +yl OWM71471.1 14 RGPWTIEEDHKLMSFILNNGTHCWRSVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	58	2.1e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++++++++++lG++ W++Ia++++ gRt++++k++w++ OWM71471.1 67 RGGFTEDEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGRQPCCEKV GLKRGPWTIE EDHKLMSFIL NNGTHCWRSV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TEDEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG 120 VDPLTHMPIK DNESKLIKGG ETYTGSNSSS TEGREVEIKA TLSEPEEKAQ EIELTLDETT 180 DLLDNYRMLC GDIGASQLRN IRDIADTTIS SQDNATTTTS TSTMEESMQQ WVDSTVDSML 240 SWDGFDCFEP DIFFFQNCQN LTQLPPHKSY FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-82	MYB family protein