PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71476.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 384aa MW: 43097.9 Da PI: 8.3953

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	83	106	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ff+rt C yG++C +H+ OWM71476.1 83 KKDCPFFLRTRMCMYGSSCELNHS 106 578****************98887 PP
2	zf-CCCH	21	6e-07	125	148	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C++++ + Ck+G+ C+++H OWM71476.1 125 KKVECKYYYSSRGCKFGEACRYSH 148 7899******************** PP
3	zf-CCCH	22	2.8e-07	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG Cky + C+F+H++ OWM71476.1 293 PGQPECPHHIKTGDCKYKSLCRFHHPK 319 5789*********************96 PP
4	zf-CCCH	19.7	1.5e-06	342	367	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++lC+ + G+C+ G+ C+F H++ OWM71476.1 342 ERKLCPSYELCGICPSGSACRFDHPK 367 589*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MRKAMASFEF SPSLSLEEQA IIAAFRSPFL DSEKVQTLIR KLDSEKEQAL MKQLQGITVG 60 ETNGSSSSIR SVQGAELPLR PYKKDCPFFL RTRMCMYGSS CELNHSPPRT NQEGADNEEH 120 LQRTKKVECK YYYSSRGCKF GEACRYSHIW IGQHVKMEQP DLESNLLVPM TQGPKQCPSY 180 MACGFYTYGP NCRLQHPEPV VTGDGSHYGS NSSENLSGLG TKYYQVTGTG DPKVSQYEVS 240 SQQCLHTRLP PRRYDHGSHN APRNQWCKKK GGQHGSLSID RSLIRADIFP ERPGQPECPH 300 HIKTGDCKYK SLCRFHHPKI QALSATSCAM NIGNPIFNFM QERKLCPSYE LCGICPSGSA 360 CRFDHPKEIE LYGTVPNAAA NYGL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MRKAMASFEF SPSLSLEEQA IIAAFRSPFL DSEKVQTLIR KLDSEKEQAL MKQLQGITVG  60
ETNGSSSSIR SVQGAELPLR PYKKDCPFFL RTRMCMYGSS CELNHSPPRT NQEGADNEEH  120
LQRTKKVECK YYYSSRGCKF GEACRYSHIW IGQHVKMEQP DLESNLLVPM TQGPKQCPSY  180
MACGFYTYGP NCRLQHPEPV VTGDGSHYGS NSSENLSGLG TKYYQVTGTG DPKVSQYEVS  240
SQQCLHTRLP PRRYDHGSHN APRNQWCKKK GGQHGSLSID RSLIRADIFP ERPGQPECPH  300
HIKTGDCKYK SLCRFHHPKI QALSATSCAM NIGNPIFNFM QERKLCPSYE LCGICPSGSA  360
CRFDHPKEIE LYGTVPNAAA NYGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-43	C3H family protein