PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71512.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 158aa MW: 17363.4 Da PI: 6.6133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dC++apyfp e+p+kf nvhk+FGasnv+kll+++++++red+++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+++++ OWM71512.1 10 PCAACKFLRRKCTPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEVHPHQREDTVNSLAYEAEARVKDPVYGCVGAISVLQRQVMSLQKELDSTNA 108 7*********************************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MASSSYSNPP CAACKFLRRK CTPDCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNEVHP 60 HQREDTVNSL AYEAEARVKD PVYGCVGAIS VLQRQVMSLQ KELDSTNADL IRYACGEMMP 120 NNIQLHGTSR QMHGDGGGGS FGHSGSYFPN GDDHNQEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-69	LBD family protein