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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OWM71552.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 277aa MW: 30904 Da PI: 4.3281 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 62.8 | 5e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq+ Le+ Fe+++++ e++++LAkklgL+ rqV vWFqNrRa++k
OWM71552.1 66 KKRRLTAEQVFLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 119
56789************************************************9 PP
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| 2 | HD-ZIP_I/II | 131.1 | 4.2e-42 | 65 | 156 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl++eqv lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ydal + +++ k++e+L++e+
OWM71552.1 65 EKKRRLTAEQVFLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDALLLSYDAIAKDNEQLKSEVI 156
69**************************************************************************************9985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 277 aa Download sequence |
MESGRFVFDP SLCSGNMLFL ESGNNPIFRG ARSVMSVEES SKRRPFFSSP EDLYDEEYYD 60 EQSPEKKRRL TAEQVFLLEK SFEEENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT 120 KQLERDYDLL KSTYDALLLS YDAIAKDNEQ LKSEVISLTE KLQAKEATGG APTAAQGHDP 180 TPSASTLQLG SVKVEDRLSS GSGGSAVVDE DGRQLLDSGD SYFDYPGCIG PVDGVQSEED 240 DRSEDGQSYF PGDVFAAAAA AAAEHEEGEP MGWWVWS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 114 | 122 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 1e-99 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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