PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71994.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 704aa    MW: 77597.3 Da    PI: 6.0924
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.45.6e-1243166881373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 
                 lv+lL++c+ea+ s++  ++++++a+l +lasp+g ++ Rlaay+teA a r++r +++++++  p+e ++    +++ aal+l+++vsPi+kf h+t 
  OWM71994.1 316 LVSLLTACVEAIGSKNIPAINHFIAKLGDLASPRGPTISRLAAYYTEAFALRVTRLWPHIFHITMPRELDRAVdDDNSGAALRLLNQVSPIPKFVHFTS 414
                 6899**********************************************************99888877665478888999***************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 N+ +l+a+eg++rvHiiDfdi+qGlQWp L+q+LasR+++p ++RiTg+g+    sk+el etgerL++fAe+l++pfef++ v++rled++l++L+vk
  OWM71994.1 415 NEILLRAFEGKDRVHIIDFDIKQGLQWPGLFQSLASRANPPSHVRITGIGD----SKQELIETGERLSSFAEALNLPFEFHP-VVDRLEDVRLWMLHVK 508
                 ***************************************************....***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gE++aVn+++qlh++l +      + +++L lv+s++P v+v++eq a  n  s+ +r++++l+yy+a+fds++++lp es er+k+E++ ++rei+n
  OWM71994.1 509 EGECVAVNCIFQLHKTLYDASGG--ALRDFLGLVRSTNPAVLVMAEQGARSNFRSLEARVVNSLRYYAAVFDSVDSSLPMESPERVKIEEM-FAREIRN 604
                 ****************9544333..3589**************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveee.....sgslvlgWkdrpLvsvSaW 373
                 +vaceg++r+erhe +e+Wr+ +ee  GF+   +++++  q +++lr+++  + ++vee+     +++l+l W+d+pL++vSaW
  OWM71994.1 605 IVACEGSDRVERHEVFETWRKLMEEqGGFRCFGITDRERLQGQMILRMYGeYEDFQVEEQaqgrdRAALTLSWRDQPLYTVSAW 688
                 ***********************87489**********************9999****776676588899************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MLAGCSSSTL LSPRHRLRTE SPAQFPACHF QLPTSMNTQR LDLPCSNFSR KDAASTRSQS  60
IRPVGVAISV EKPIEAKKAA SCSLKQHIRL PPLTTAAPAV AVAAAAGTAT SAFVESRKGG  120
ELWERGGKKK NLKRFAEEED ESRVIRAKRK RSGEKVDEFG EDDCGGGDAL SMAQLGGGGG  180
GSFWFQPSFT TAPTVPFSIT CSGEGEDRAC FIPGEVVSPR LPVSSIPWVD SVVTEITDLG  240
EKDGETTSHR PSPMPGKEAS GGSSTSSESH QSLTLRLNEA ATSEHKVGNG SSRNPYQEAR  300
EEEENQGEYR GFEFELVSLL TACVEAIGSK NIPAINHFIA KLGDLASPRG PTISRLAAYY  360
TEAFALRVTR LWPHIFHITM PRELDRAVDD DNSGAALRLL NQVSPIPKFV HFTSNEILLR  420
AFEGKDRVHI IDFDIKQGLQ WPGLFQSLAS RANPPSHVRI TGIGDSKQEL IETGERLSSF  480
AEALNLPFEF HPVVDRLEDV RLWMLHVKEG ECVAVNCIFQ LHKTLYDASG GALRDFLGLV  540
RSTNPAVLVM AEQGARSNFR SLEARVVNSL RYYAAVFDSV DSSLPMESPE RVKIEEMFAR  600
EIRNIVACEG SDRVERHEVF ETWRKLMEEQ GGFRCFGITD RERLQGQMIL RMYGEYEDFQ  660
VEEQAQGRDR AALTLSWRDQ PLYTVSAWAP VDHAGSSSSF SQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein