PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM72019.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YC
Protein Properties Length: 144aa    MW: 15517.9 Da    PI: 9.3153
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM72019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC100.21.5e-31221041996
       NF-YC  19 helPlarikkilkad.....edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 h lPlarikki+k       e+vkmis eaP+++skacelfi elt rsw+ + + krrt++k d+a+av  td fdflv+ v
  OWM72019.1  22 HLLPLARIKKIMKRSsgnggEEVKMISGEAPIVFSKACELFIEELTRRSWIMTVQGKRRTIHKDDVASAVVATDLFDFLVNLV 104
                 789**********75344448**********************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MRQAGTYSGI LCGGISGKTG PHLLPLARIK KIMKRSSGNG GEEVKMISGE APIVFSKACE  60
LFIEELTRRS WIMTVQGKRR TIHKDDVASA VVATDLFDFL VNLVDGSGRV GMASGKGDEG  120
DHDLVVHDQT MSMATRTTSL VPRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.14e-32NF-YC family protein