PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72322.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 316aa MW: 34965.6 Da PI: 8.041

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	18	43	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ rtG C++G++C+F+H+ OWM72322.1 18 PGEPDCSYYIRTGLCRFGATCRFNHP 43 5789*********************8 PP
2	zf-CCCH	35.5	1.7e-11	97	120	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C +++rtG+Ck+G++CkF+H OWM72322.1 97 EVECAYYLRTGQCKFGSTCKFHHR 120 689********************6 PP
3	zf-CCCH	38.5	2e-12	190	216	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OWM72322.1 190 PGQPECQFYMKTGDCKFGAVCRFHHPR 216 5789*********************96 PP
4	zf-CCCH	40.7	3.9e-13	236	262	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OWM72322.1 236 PGEPLCIFYSRYGICKFGPSCKFDHPM 262 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MNMRSPETME PGPYPERPGE PDCSYYIRTG LCRFGATCRF NHPSNRKLAI ANARMKGEYP 60 ERPGQPECQA CGNVLYKAGI AGRVSLNILG YPLRPNEVEC AYYLRTGQCK FGSTCKFHHR 120 QPSNMMSQLA SVSSSENLLQ TAGNSQVYGT TRQSDLVNIG SHGAFSPDYS GSLSVGSSAM 180 QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERII PPPDCALSPM GLPLRPGEPL 240 CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS ASSLADPAAQ HFPKLSTEGL VGKTRRLSLS 300 ETRQMPSSED DIDTEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-118	C3H family protein