PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73209.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 318aa MW: 35590.9 Da PI: 8.4701

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++vk+ G g+W+t +++ g+ R++k+c++rw +yl OWM73209.1 24 RGPWTPEEDELLSNYVKKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYL 71 89********************************************97 PP
2	Myb_DNA-binding	46.8	7e-15	82	122	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OWM73209.1 82 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 122 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MRAPSFSAST TCKTPCCSKV GIKRGPWTPE EDELLSNYVK KEGEGRWRTL PKRAGLQRCG 60 KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT 120 HLSKKLINQG IDPRTHKPLN PFPDSPGDAV SNAFVPTSNR PPQQPYLSAS TIDKANGSQH 180 QAIPTVQDDI GRVIGEQEQQ RNHPIPVETG NWQNSDGIMV GLHNVSHGGS NNNGQSYIID 240 NFNNEDMFSS FLNTLMDDTY ASPYQRPEAA VPPSQLVSMV SPAVNFSSQG AMWDAELVRS 300 TLETLGDQQS YNTNIRQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-80	MYB family protein