PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73568.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 515aa MW: 57392 Da PI: 6.516

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	5.8e-19	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed++l+++v+++G g+W++I ++ g+ R++k+c++rw ++l OWM73568.1 42 KGPWTTAEDQILAEYVTKHGEGNWNAIQKHTGLSRCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	48.9	1.5e-15	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++ ++++G++ W++ a +++ gRt++++k++w++ OWM73568.1 95 KGPFTPEEERLIAEMHAKMGNK-WARMAMELP-GRTDNEIKNYWNT 138 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MLNEMRRMKD EGEDKRIRKQ RKSSSSSDEG SDGGVGGVVL KKGPWTTAED QILAEYVTKH 60 GEGNWNAIQK HTGLSRCGKS CRLRWANHLR PDLKKGPFTP EEERLIAEMH AKMGNKWARM 120 AMELPGRTDN EIKNYWNTRT KRLQRAGMPL YPSDLCLQLS AESQEGQNMV IFPTGGKNHP 180 DLFQADNIRI IPDVGFKGLE LGNRGFSSYL STLFPREAVG FTNCSTPIQA SHPRQAVGFM 240 NYSNSFQASH LPKHPPEWET PYPVFNSNGF PPFGESCSES YDRNYEAFTF SSSSSSYVDD 300 LEMNNQLLPD VPLGSHAYIN GNPSSLEPLS WATKMELPSL QYLSETQVDN PWGQLMTPPL 360 TPRESENVLI YSPLTEQTHR DYPSPRSSGL LEAVVHESRA SKKSEGSFSR TWNVSNFEGS 420 TSPPDHTITP WDAQNDRNPP LSSRAASLTN GYYLMNRSAL QEPKNADTML GHQVMPKAGG 480 KSLANYGPNE EMMNHLSATS PDAFLDMAGL SGPYA

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MLNEMRRMKD EGEDKRIRKQ RKSSSSSDEG SDGGVGGVVL KKGPWTTAED QILAEYVTKH  60
GEGNWNAIQK HTGLSRCGKS CRLRWANHLR PDLKKGPFTP EEERLIAEMH AKMGNKWARM  120
AMELPGRTDN EIKNYWNTRT KRLQRAGMPL YPSDLCLQLS AESQEGQNMV IFPTGGKNHP  180
DLFQADNIRI IPDVGFKGLE LGNRGFSSYL STLFPREAVG FTNCSTPIQA SHPRQAVGFM  240
NYSNSFQASH LPKHPPEWET PYPVFNSNGF PPFGESCSES YDRNYEAFTF SSSSSSYVDD  300
LEMNNQLLPD VPLGSHAYIN GNPSSLEPLS WATKMELPSL QYLSETQVDN PWGQLMTPPL  360
TPRESENVLI YSPLTEQTHR DYPSPRSSGL LEAVVHESRA SKKSEGSFSR TWNVSNFEGS  420
TSPPDHTITP WDAQNDRNPP LSSRAASLTN GYYLMNRSAL QEPKNADTML GHQVMPKAGG  480
KSLANYGPNE EMMNHLSATS PDAFLDMAGL SGPYA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26960.1	5e-69	MYB family protein