PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73889.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 235aa MW: 26617.9 Da PI: 5.3664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl OWM73889.1 14 RGPWTLEEDQILIDYIRVHGHGNWRKLPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	45.2	2.2e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++ ++ +lG++ W++Ia++++ gRt++++k+ w+++l OWM73889.1 67 RGNFSKEEENTIIMLHGMLGNR-WSAIAARLP-GRTDNEIKNIWHTHL 112 89******************.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MVRAPCCEKM GLKRGPWTLE EDQILIDYIR VHGHGNWRKL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEENTIIM LHGMLGNRWS AIAARLPGRT DNEIKNIWHT HLKKRLPKHE 120 TDVTSEDKTV DGEFKPVPTP DNTQQEETYD SGLSPQHCSS SSISSAVISD DGNNASQATG 180 YSEDNFWSEV LSINDDCGGL KVGIQDINDF LLWEGTDDYW YNILSSAALP ELLEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-73	MYB family protein