PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM73903.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 239aa    MW: 25926.5 Da    PI: 6.4049
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM73903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.91.9e-39151151100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf++eq   +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  OWM73903.1  15 PCGACKFLRRKCVQGCVFAPYFCHEQgVTHFAAIHKVFGASNVSKLLTHLPVSDRAEAAVTISYEAQARLHDPIYGCVSHIFALQQQVVNLQAQLASLK 113
                 7*************************77********************************************************************999 PP

      DUF260  99 ee 100
                 e+
  OWM73903.1 114 EQ 115
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTGSGSSSGS GCGSPCGACK FLRRKCVQGC VFAPYFCHEQ GVTHFAAIHK VFGASNVSKL  60
LTHLPVSDRA EAAVTISYEA QARLHDPIYG CVSHIFALQQ QVVNLQAQLA SLKEQAAQSI  120
SNANTCANPN SRYHGKLPSP TQDWQSWARH IQTQSSPQYD PNHNGSPSSI AFGGIGFPNS  180
DSVNYENSAV SEENASFTGY REASGYSIPY LDMETSNEQW TLDDADDLRT IAFRYSQNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-56LBD family protein