PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74213.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 240aa MW: 26619 Da PI: 6.0772

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.3	7.1e-56	60	163	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv OWM74213.1 60 QLQSFWANQcqeIEHTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 158 89****99999********************************************************************************** PP NF-YC 97 prdel 101 pr++l OWM74213.1 159 PREDL 163 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MDPSGNGNTA QMPYGMNQYQ PNQVGSGPSP PPAQPPATSA QHQLAYQHIH QQQQQQLQQQ 60 LQSFWANQCQ EIEHTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVVFA RACEMFILEL 120 TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLREEVLGP VARGGLGVGG 180 AGGVPVGAPA EGVPYYMMPP PQHGAPQIGG VQALYGQQPR PYMGQPMWPQ QQQQHPADET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-70	NF-YC family protein