PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74531.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 25673.8 Da PI: 7.9515

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.8e-20	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Lee F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k OWM74531.1 53 KKRKLSTEQVTLLEESFGNEHKLESDRKDRLASELGLDPRQVAVWFQNRRARWK 106 45689************************************************9 PP
2	HD-ZIP_I/II	120.8	7.2e-39	53	144	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLEesF +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++a e++rLe+ev +L+e+l+e OWM74531.1 53 KKRKLSTEQVTLLEESFGNEHKLESDRKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSLHEAAIVEKCRLETEVLKLKEQLSE 144 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MTNNNQIEDQ MALFSQLYPG VYTPIPPASR ESKPRRRRRK NKGGDASGLM GAKKRKLSTE 60 QVTLLEESFG NEHKLESDRK DRLASELGLD PRQVAVWFQN RRARWKSKKL EEEYSKLKSL 120 HEAAIVEKCR LETEVLKLKE QLSEAGKEIQ KLSSISSSSS SSDHQRCCDH QGFNSSNSPS 180 TSSISMDRGQ PDFLGDFGYE DDVMFYMPEN SYSVQCMEWL NLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	56	RRRRRKNKGGDASGLMGAKKRK
2	36	57	RRRRRKNKGGDASGLMGAKKRK
3	37	58	RRRRRKNKGGDASGLMGAKKRK
4	38	59	RRRRRKNKGGDASGLMGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-52	HD-ZIP family protein