PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74688.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LSD

Protein Properties

Length: 175aa MW: 18457.3 Da PI: 8.4892

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.6	7.3e-12	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr++L YPrGA++V CalC OWM74688.1 7 CSGCRNTLLYPRGATNVLCALCRS 30 **********************86 PP
2	zf-LSD1	49.7	6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV OWM74688.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49	9.8e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+CalC+ V OWM74688.1 84 CGNCRTMLMYPYGAPSVKCALCQYV 108 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQLVCSGC RNTLLYPRGA TNVLCALCRS ITSVPPPGIE MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLVPGSNQYA QVNCGNCRTM LMYPYGAPSV KCALCQYVTN VGAGNVRVPI 120 PAQRNNGTTG SDSTPSTSSM PHSTQTVVVE NPMSVDESGK LVTNVVVGVT TEKKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-71	LSD family protein