PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74936.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 172aa MW: 18964.1 Da PI: 7.8501

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.7	2e-43	15	113	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++C++apyfp e+p+kfa vhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ OWM74936.1 15 PCAACKFLRRKCQPECIFAPYFPPEEPQKFASVHKIFGASNVSKLLHEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 113 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MASSSSSSSS YSTSPCAACK FLRRKCQPEC IFAPYFPPEE PQKFASVHKI FGASNVSKLL 60 HEVLPHQRED TVNSLAYEAE ARLKDPVYGC VGAISVLQRQ VIRLQKELDA TNADLIRHTT 120 RRRINGNNSG HRSGGEGYDQ GPGIIYYPNY HQWNCNGGFG DGHQGDGEGN NM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-65	LBD family protein