PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74987.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 429aa MW: 46221.3 Da PI: 9.638

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	190	212	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H OWM74987.1 190 ACSQCGEVFPKIESLELHQAVrH 212 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MALLTFVPQE PTPSPSKRKQ THRKQHPEQP HKPSPKPTEN KPAKQPSSWD QFKNLLTCKQ 60 VEGTRVHDPS KPANHPPGKL GSSCSSICSF RDVVHGNTRV VHRADSSSPE SSSLGQETGL 120 LSRKACGNGS SSSRSLSGST AKSHHGGPAS GTGHSSSRGM QFRKLSGCYE CRMIVDPSRY 180 PYTPRATICA CSQCGEVFPK IESLELHQAV RHAVSELGPE DSGRNIVEII FKSSWLKKDN 240 PICKIERILK VHNTQRTIQR FEDCRDAVKN RALASARKNP RCAADGNELL RFHCTTLACS 300 LGHRGSTSLC GSVPACGVCT VIRHGFQGKS ASGGGVRTTA SSGRAHDSLR CTDGRRAMLV 360 CRVIAGRLKR TAADDAVGTT PEENGGVSAG SYDSVAGYAG MYSSLEELLV FNPRAILPCF 420 VVIYKALES

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MALLTFVPQE PTPSPSKRKQ THRKQHPEQP HKPSPKPTEN KPAKQPSSWD QFKNLLTCKQ  60
VEGTRVHDPS KPANHPPGKL GSSCSSICSF RDVVHGNTRV VHRADSSSPE SSSLGQETGL  120
LSRKACGNGS SSSRSLSGST AKSHHGGPAS GTGHSSSRGM QFRKLSGCYE CRMIVDPSRY  180
PYTPRATICA CSQCGEVFPK IESLELHQAV RHAVSELGPE DSGRNIVEII FKSSWLKKDN  240
PICKIERILK VHNTQRTIQR FEDCRDAVKN RALASARKNP RCAADGNELL RFHCTTLACS  300
LGHRGSTSLC GSVPACGVCT VIRHGFQGKS ASGGGVRTTA SSGRAHDSLR CTDGRRAMLV  360
CRVIAGRLKR TAADDAVGTT PEENGGVSAG SYDSVAGYAG MYSSLEELLV FNPRAILPCF  420
VVIYKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2 family protein