PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75022.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 27089.8 Da PI: 6.3069

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA EL vLCda+v++i++sst +l+ey+s OWM75022.1 9 KPIENPTNRQVTYSKRRNGLFKKARELTVLCDAKVSLIMISSTKRLHEYIS 59 78***********************************************86 PP
2	K-box	77	4.9e-26	71	170	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yqk+ +++ +++++e +++el+kLk+ +++L+ + +R++lGe+Le+Ls++eL Leq++ ++l+ iR++K ++l ++i+++ kk ++ + +n++L +++ OWM75022.1 71 YQKTMDVDIWSSHYEAMEEELRKLKEVNSQLRlEINRRRLGEGLEELSMRELCGLEQEIRDGLEVIRERKIKVLSSEIDKTNKKRRNGEVINRRLIQQF 169 78888999**********************8777**********************************************************998 PP K-box 99 e 99 e OWM75022.1 170 E 170 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MTRGKIQIKP IENPTNRQVT YSKRRNGLFK KARELTVLCD AKVSLIMISS TKRLHEYISP 60 NTTTKEMIDE YQKTMDVDIW SSHYEAMEEE LRKLKEVNSQ LRLEINRRRL GEGLEELSMR 120 ELCGLEQEIR DGLEVIRERK IKVLSSEIDK TNKKRRNGEV INRRLIQQFE SINIEAGEDD 180 PHFGLVYNGG IIDPDYVIGY SNGGTREFGL CCDRSLPSNV CSGDVSDITT YPLLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-77	MIKC_MADS family protein