PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75023.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 151aa MW: 17911.5 Da PI: 7.6702

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.7	9.4e-16	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien +nrq tf+ R+ g+ AeELSv +a+v+++++sst+k++ey+s OWM75023.1 10 PIENMTNRQLTFASRLCGLRERAEELSVVFGAKVLMLMISSTNKFHEYIS 59 79**********************************************86 PP
2	K-box	49.6	1.8e-17	71	146	1	75
K-box 1 yqkssgksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 yq+++g +l+++++e ++ +l+k k+e++ L + ++++Ge+L+++ keL+ Leq+++ +l+ iR++K + ++ OWM75023.1 71 YQRRRGLDLWSSHYEAMEDNLRKAKEENRDLYlEISKRRMGEGLNDMIEKELRDLEQEMQLALTAIRERKVRTVTL 146 67888899*********************97666899*****************************987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MARGKTKIQP IENMTNRQLT FASRLCGLRE RAEELSVVFG AKVLMLMISS TNKFHEYISP 60 DTSTEEMIDE YQRRRGLDLW SSHYEAMEDN LRKAKEENRD LYLEISKRRM GEGLNDMIEK 120 ELRDLEQEMQ LALTAIRERK VRTVTLHRHT Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-41	MIKC_MADS family protein