PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75154.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 301aa MW: 34327.5 Da PI: 6.7432

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	13	51	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g ++ R++k+c++rw +yl OWM75154.1 13 RGLWSPEEDEKLIRHITTHGHG-------SLQ--RCGKSCRLRWINYL 51 788***************99.......566..**********97 PP
2	Myb_DNA-binding	52.3	1.3e-16	57	100	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ OWM75154.1 57 RGSFTAQEERTIIDVHRILGNR-WSQIAKHLP-GRTDNEVKNFWNS 100 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGHQCCSKQK VKRGLWSPEE DEKLIRHITT HGHGSLQRCG KSCRLRWINY LRPDLKRGSF 60 TAQEERTIID VHRILGNRWS QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG LDPNTHNLLP 120 SHHQKKASSS SNSSNTSTFS LLHKQLSSVF QIDDGPREVK IPFVTLPSLS SYDSNTVADL 180 PPIQPYDYQK YLHMEQNPSI PISDSILSSS VIEESCIWNT SAEAPVSMGH DELQLQHYTD 240 NYREERISPE NKSTSEPNIN DHNIDAGMLS SSFDFEYMES IQVPCGMFCN LSDPMDQLTW 300 N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	5e-75	MYB family protein