PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75251.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 325aa MW: 36469.8 Da PI: 7.7045

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.6e-09	72	96	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f GtC+ G++C+FaHg OWM75251.1 72 FKTRMCAKFKM-GTCRNGENCNFAHG 96 69*******.***********8 PP
2	zf-CCCH	28.9	1.9e-09	133	156	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H OWM75251.1 133 KMKLCKKFYNGEECPYGDRCNFLH 156 789*****66********** PP
3	zf-CCCH	41.7	1.9e-13	214	239	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f tG C++Gd+C+FaHg OWM75251.1 214 WKTKLCTKFEVTGDCPFGDKCHFAHG 239 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MPPASQHFGD SAAYWAQFPM SNEQFDPTSQ FDFDHPQPPL KRPRNFEESP SNSAPYPRPN 60 PPINKGATNI FFKTRMCAKF KMGTCRNGEN CNFAHGIEDM RQPPPNWQEL VGAREDDHRS 120 SDNWDDDQKI IHKMKLCKKF YNGEECPYGD RCNFLHEGPS KFRDDSGRFR ETSAICIGTS 180 GTPMGHRNGS NQSEVWRAAS SSVDPRVNMK PVYWKTKLCT KFEVTGDCPF GDKCHFAHGI 240 AELQSFVGRV EDEQMNIAPI AVKSQPIFSS DPSSIGTSVV APAAGEGQAK KSLLKWKGNK 300 KINQIYADWL SDSPLLQNTP SKPES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-87	C3H family protein